IL_4V4Y_023
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- GUGUAG*UGAGGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4Y_023 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.2185
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4Y|1|AA|G|579
4V4Y|1|AA|U|580
4V4Y|1|AA|G|581
4V4Y|1|AA|U|582
4V4Y|1|AA|A|583
4V4Y|1|AA|G|584
*
4V4Y|1|AA|U|757
4V4Y|1|AA|G|758
4V4Y|1|AA|A|759
4V4Y|1|AA|G|760
4V4Y|1|AA|G|761
4V4Y|1|AA|C|762
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AK
- 30S ribosomal protein S8
- Chain AO
- 30S ribosomal protein S12
- Chain AR
- 30S ribosomal protein S15
- Chain AT
- 30S ribosomal protein S17
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: