IL_4V4Y_063

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_063 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.2229

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V4Y|1|BA|G|188
4V4Y|1|BA|G|189
4V4Y|1|BA|A|190
4V4Y|1|BA|A|191
4V4Y|1|BA|C|192
4V4Y|1|BA|U|193
4V4Y|1|BA|G|194
*
4V4Y|1|BA|C|201
4V4Y|1|BA|U|202
4V4Y|1|BA|C|203
4V4Y|1|BA|A|204
4V4Y|1|BA|G|205
4V4Y|1|BA|U|206
4V4Y|1|BA|A|207
4V4Y|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L31

Chain BO

50S ribosomal protein L15