IL_4V4Y_064

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_064 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.2924

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V4Y|1|BA|U|239
4V4Y|1|BA|G|240
4V4Y|1|BA|A|241
4V4Y|1|BA|G|242
4V4Y|1|BA|U|243
4V4Y|1|BA|A|244
4V4Y|1|BA|G|245
*
4V4Y|1|BA|C|253
4V4Y|1|BA|G|254
4V4Y|1|BA|A|255
4V4Y|1|BA|A|256
4V4Y|1|BA|A|257
4V4Y|1|BA|G|258

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L35

Chain BO

50S ribosomal protein L15