IL_4V4Y_081
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- GCUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4Y_081 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.5044
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
4V4Y|1|BA|G|875
4V4Y|1|BA|C|876
4V4Y|1|BA|U|877
4V4Y|1|BA|A|878
4V4Y|1|BA|G|879
*
4V4Y|1|BA|C|898
4V4Y|1|BA|A|899
4V4Y|1|BA|A|900
4V4Y|1|BA|A|901
4V4Y|1|BA|C|902
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BP
- 50S ribosomal protein L16
- Chain BY
- 50S ribosomal protein L25
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