IL_4V4Y_082

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_082 not in the Motif Atlas

Geometric match to IL_5TBW_039

Geometric discrepancy: 0.3834

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V4Y|1|BA|G|880
4V4Y|1|BA|G|881
*
4V4Y|1|BA|U|895
4V4Y|1|BA|A|896
4V4Y|1|BA|C|897

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain BY

50S ribosomal protein L25