IL_4V4Y_088
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- UAAGUGGUAAAG*CGAAAAUGAUGCGGGGCUUAA
- Length
- 33 nucleotides
- Bulged bases
- 4V4Y|1|BA|A|1127, 4V4Y|1|BA|U|1130, 4V4Y|1|BA|U|1141, 4V4Y|1|BA|U|1142
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4Y|1|BA|U|1019
4V4Y|1|BA|A|1020
4V4Y|1|BA|A|1021
4V4Y|1|BA|G|1022
4V4Y|1|BA|U|1023
4V4Y|1|BA|G|1024
4V4Y|1|BA|G|1025
4V4Y|1|BA|U|1026
4V4Y|1|BA|A|1027
4V4Y|1|BA|A|1028
4V4Y|1|BA|A|1029
4V4Y|1|BA|G|1030
*
4V4Y|1|BA|C|1124
4V4Y|1|BA|G|1125
4V4Y|1|BA|A|1126
4V4Y|1|BA|A|1127
4V4Y|1|BA|A|1128
4V4Y|1|BA|A|1129
4V4Y|1|BA|U|1130
4V4Y|1|BA|G|1131
4V4Y|1|BA|A|1132
4V4Y|1|BA|U|1133
4V4Y|1|BA|G|1134
4V4Y|1|BA|C|1135
4V4Y|1|BA|G|1136
4V4Y|1|BA|G|1137
4V4Y|1|BA|G|1138
4V4Y|1|BA|G|1139
4V4Y|1|BA|C|1140
4V4Y|1|BA|U|1141
4V4Y|1|BA|U|1142
4V4Y|1|BA|A|1142|||A
4V4Y|1|BA|A|1143
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B8
- 50S ribosomal protein L36
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BE
- 50S ribosomal protein L3
- Chain BH
- 50S ribosomal protein L6
- Chain BM
- 50S ribosomal protein L13
- Chain BP
- 50S ribosomal protein L16
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