IL_4V4Y_090

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V4Y|1|BA|A|1046, 4V4Y|1|BA|A|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|C|1043
4V4Y|1|BA|G|1044
4V4Y|1|BA|A|1045
4V4Y|1|BA|A|1046
4V4Y|1|BA|G|1047
4V4Y|1|BA|A|1048
4V4Y|1|BA|C|1049
4V4Y|1|BA|A|1050
4V4Y|1|BA|G|1051
*
4V4Y|1|BA|U|1108
4V4Y|1|BA|C|1109
4V4Y|1|BA|G|1110
4V4Y|1|BA|A|1111
4V4Y|1|BA|G|1112

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6