IL_4V4Y_118
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 4V4Y|1|BA|A|1938, 4V4Y|1|BA|U|1944, 4V4Y|1|BA|U|1963
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4Y_118 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.2996
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
4V4Y|1|BA|C|1934
4V4Y|1|BA|G|1935
4V4Y|1|BA|A|1936
4V4Y|1|BA|A|1937
4V4Y|1|BA|A|1938
4V4Y|1|BA|U|1939
4V4Y|1|BA|U|1940
4V4Y|1|BA|C|1941
4V4Y|1|BA|C|1942
4V4Y|1|BA|U|1943
4V4Y|1|BA|U|1944
4V4Y|1|BA|G|1945
*
4V4Y|1|BA|C|1961
4V4Y|1|BA|C|1962
4V4Y|1|BA|U|1963
4V4Y|1|BA|G|1964
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AB
- Transfer RNA; tRNA
- Chain BZ
- Ribosomal protein L27
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