IL_4V4Y_120

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

4V4Y|1|BA|C|2055, 4V4Y|1|BA|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_120 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.4176

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

4V4Y|1|BA|A|2054
4V4Y|1|BA|C|2055
4V4Y|1|BA|G|2056
*
4V4Y|1|BA|C|2612
4V4Y|1|BA|U|2613
4V4Y|1|BA|A|2614
4V4Y|1|BA|U|2615

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22