IL_4V4Y_143

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_143 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.2241

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V4Y|1|BA|C|2695
4V4Y|1|BA|U|2696
*
4V4Y|1|BA|A|2711
4V4Y|1|BA|U|2712
4V4Y|1|BA|A|2712|||A
4V4Y|1|BA|A|2713
4V4Y|1|BA|G|2714

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L17

Chain BS

50S ribosomal protein L19