IL_4V4Y_152
3D structure
- PDB id
- 4V4Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4Y_152 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.2962
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4Y|1|BB|C|71
4V4Y|1|BB|G|72
4V4Y|1|BB|A|73
4V4Y|1|BB|U|74
4V4Y|1|BB|G|75
4V4Y|1|BB|G|76
4V4Y|1|BB|U|77
4V4Y|1|BB|A|78
4V4Y|1|BB|C|79
*
4V4Y|1|BB|G|97
4V4Y|1|BB|G|98
4V4Y|1|BB|A|99
4V4Y|1|BB|G|100
4V4Y|1|BB|A|101
4V4Y|1|BB|G|102
4V4Y|1|BB|U|103
4V4Y|1|BB|A|104
4V4Y|1|BB|G|105
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BP
- 50S ribosomal protein L16
- Chain BY
- 50S ribosomal protein L25
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