IL_4V4Y_156

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UAGUUG*CACUCUA

Length

13 nucleotides

Bulged bases

4V4Y|1|AA|U|1125, 4V4Y|1|AA|U|1148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|AA|U|1122
4V4Y|1|AA|A|1123
4V4Y|1|AA|G|1124
4V4Y|1|AA|U|1125
4V4Y|1|AA|U|1126
4V4Y|1|AA|G|1127
*
4V4Y|1|AA|C|1145
4V4Y|1|AA|A|1146
4V4Y|1|AA|C|1147
4V4Y|1|AA|U|1148
4V4Y|1|AA|C|1149
4V4Y|1|AA|U|1150
4V4Y|1|AA|A|1151

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S9

Chain AM

30S ribosomal protein S10