IL_4V4Y_164

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_164 not in the Motif Atlas

Homologous match to IL_6CZR_367

Geometric discrepancy: 0.2973

The information below is about IL_6CZR_367

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|AA|C|1259
4V4Y|1|AA|C|1260
4V4Y|1|AA|A|1261
4V4Y|1|AA|C|1262
*
4V4Y|1|AA|G|1273
4V4Y|1|AA|G|1274
4V4Y|1|AA|A|1275
4V4Y|1|AA|G|1276

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AX

30S ribosomal protein Thx