IL_4V4Y_166

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UCGGACACCGAA*UAGGUGA

Length

19 nucleotides

Bulged bases

4V4Y|1|BA|G|275, 4V4Y|1|BA|A|276, 4V4Y|1|BA|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|U|273|||E
4V4Y|1|BA|C|273|||F
4V4Y|1|BA|G|274
4V4Y|1|BA|G|275
4V4Y|1|BA|A|276
4V4Y|1|BA|C|277
4V4Y|1|BA|A|278
4V4Y|1|BA|C|279
4V4Y|1|BA|C|280
4V4Y|1|BA|G|281
4V4Y|1|BA|A|282
4V4Y|1|BA|A|283
*
4V4Y|1|BA|U|358
4V4Y|1|BA|A|359
4V4Y|1|BA|G|360
4V4Y|1|BA|G|361
4V4Y|1|BA|U|362
4V4Y|1|BA|G|363
4V4Y|1|BA|A|363|||A

Current chains

Chain BA

23S ribosomal RNA

Nearby chains