IL_4V4Z_055

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4V4Z|1|AA|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_055 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.2705

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4Z|1|AA|C|1440
4V4Z|1|AA|G|1441
4V4Z|1|AA|G|1442
4V4Z|1|AA|G|1443
4V4Z|1|AA|A|1446
4V4Z|1|AA|G|1447
*
4V4Z|1|AA|C|1459
4V4Z|1|AA|A|1460
4V4Z|1|AA|G|1461

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AW

30S ribosomal protein S20

Chain BS

50S RIBOSOMAL PROTEIN L19