IL_4V4Z_062

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_062 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.1495

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V4Z|1|BA|G|188
4V4Z|1|BA|G|189
4V4Z|1|BA|A|190
4V4Z|1|BA|A|191
4V4Z|1|BA|C|192
4V4Z|1|BA|U|193
4V4Z|1|BA|G|194
*
4V4Z|1|BA|C|201
4V4Z|1|BA|U|202
4V4Z|1|BA|C|203
4V4Z|1|BA|A|204
4V4Z|1|BA|G|205
4V4Z|1|BA|U|206
4V4Z|1|BA|A|207
4V4Z|1|BA|C|208

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L31

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BF

50S RIBOSOMAL PROTEIN L4