IL_4V4Z_073

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_073 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.5512

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V4Z|1|BA|C|844
4V4Z|1|BA|G|845
4V4Z|1|BA|C|846
*
4V4Z|1|BA|G|932
4V4Z|1|BA|A|933
4V4Z|1|BA|G|934

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L30