3D structure

PDB id
4V4Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.
Experimental method
X-RAY DIFFRACTION
Resolution
4.51 Å

Loop

Sequence
GCUAG*CAAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Z_078 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.5328
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4V4Z|1|BA|G|875
4V4Z|1|BA|C|876
4V4Z|1|BA|U|877
4V4Z|1|BA|A|878
4V4Z|1|BA|G|879
*
4V4Z|1|BA|C|898
4V4Z|1|BA|A|899
4V4Z|1|BA|A|900
4V4Z|1|BA|A|901
4V4Z|1|BA|C|902

Current chains

Chain BA
23S rRNA

Nearby chains

Chain BP
50S RIBOSOMAL PROTEIN L16
Chain BY
50S RIBOSOMAL PROTEIN L25

Coloring options:


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