IL_4V4Z_083

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

4V4Z|1|BA|C|1008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_083 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.2877

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V4Z|1|BA|C|1004
4V4Z|1|BA|C|1005
4V4Z|1|BA|C|1006
4V4Z|1|BA|C|1007
4V4Z|1|BA|C|1008
4V4Z|1|BA|A|1009
4V4Z|1|BA|A|1010
4V4Z|1|BA|G|1011
*
4V4Z|1|BA|C|1150
4V4Z|1|BA|G|1151

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BM

50S RIBOSOMAL PROTEIN L13

Chain BT

50S RIBOSOMAL PROTEIN L20