IL_4V4Z_093

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

4V4Z|1|BA|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_093 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.3677

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V4Z|1|BA|G|1219
4V4Z|1|BA|A|1220
4V4Z|1|BA|C|1221
*
4V4Z|1|BA|G|1228
4V4Z|1|BA|G|1229
4V4Z|1|BA|C|1230

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BT

50S RIBOSOMAL PROTEIN L20

Chain BU

50S RIBOSOMAL PROTEIN L21