IL_4V4Z_104

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_104 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.2229

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V4Z|1|BA|G|1651
4V4Z|1|BA|A|1652
4V4Z|1|BA|G|1653
4V4Z|1|BA|A|1654
4V4Z|1|BA|A|1655
4V4Z|1|BA|C|1656
*
4V4Z|1|BA|G|2004
4V4Z|1|BA|A|2005
4V4Z|1|BA|C|2006

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BQ

50S RIBOSOMAL PROTEIN L17