IL_4V4Z_111

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

4V4Z|1|BA|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_111 not in the Motif Atlas

Homologous match to IL_4WF9_071

Geometric discrepancy: 0.3462

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

4V4Z|1|BA|U|1841
4V4Z|1|BA|G|1842
*
4V4Z|1|BA|U|1898
4V4Z|1|BA|G|1899
4V4Z|1|BA|A|1900
4V4Z|1|BA|A|1901

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S RIBOSOMAL PROTEIN L2