IL_4V4Z_113

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_113 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.2393

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V4Z|1|BA|U|1851
4V4Z|1|BA|C|1852
4V4Z|1|BA|A|1853
4V4Z|1|BA|A|1854
4V4Z|1|BA|G|1855
*
4V4Z|1|BA|C|1887
4V4Z|1|BA|G|1888
4V4Z|1|BA|A|1889
4V4Z|1|BA|A|1890
4V4Z|1|BA|G|1891

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AD

Transfer RNA; tRNA