IL_4V4Z_114

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_114 not in the Motif Atlas

Homologous match to IL_4WF9_074

Geometric discrepancy: 0.4635

The information below is about IL_4WF9_074

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V4Z|1|BA|G|1856
4V4Z|1|BA|G|1857
4V4Z|1|BA|G|1858
4V4Z|1|BA|A|1859
4V4Z|1|BA|G|1860
*
4V4Z|1|BA|C|1882
4V4Z|1|BA|G|1883
4V4Z|1|BA|A|1884
4V4Z|1|BA|A|1885
4V4Z|1|BA|C|1886

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain B3

50S RIBOSOMAL PROTEIN L31

Chain BC

50S RIBOSOMAL PROTEIN L1