IL_4V4Z_127

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_127 not in the Motif Atlas

Homologous match to IL_4WF9_087

Geometric discrepancy: 0.1658

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V4Z|1|BA|C|2350
4V4Z|1|BA|G|2351
4V4Z|1|BA|A|2352
4V4Z|1|BA|G|2353
*
4V4Z|1|BA|C|2364
4V4Z|1|BA|G|2365
4V4Z|1|BA|A|2366
4V4Z|1|BA|G|2367

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L35

Chain BZ

50S RIBOSOMAL PROTEIN L27