IL_4V4Z_157

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

4V4Z|1|BA|U|2866, 4V4Z|1|BA|G|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Z_157 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.3318

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V4Z|1|BA|U|2847
4V4Z|1|BA|G|2848
4V4Z|1|BA|U|2849
4V4Z|1|BA|A|2850
4V4Z|1|BA|A|2851
4V4Z|1|BA|G|2852
*
4V4Z|1|BA|U|2865
4V4Z|1|BA|U|2866
4V4Z|1|BA|G|2867
4V4Z|1|BA|A|2868
4V4Z|1|BA|G|2869

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S RIBOSOMAL PROTEIN L17

Chain BS

50S RIBOSOMAL PROTEIN L19