IL_4V50_020

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4V50|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.169

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V50|1|AA|U|409
4V50|1|AA|G|410
4V50|1|AA|A|411
4V50|1|AA|A|412
4V50|1|AA|G|413
4V50|1|AA|A|414
4V50|1|AA|A|415
4V50|1|AA|G|416
*
4V50|1|AA|U|427
4V50|1|AA|G|428
4V50|1|AA|U|429
4V50|1|AA|A|430
4V50|1|AA|A|431
4V50|1|AA|A|432
4V50|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4