IL_4V50_059

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_059 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.1867

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V50|1|AA|C|1303
4V50|1|AA|G|1304
4V50|1|AA|G|1305
4V50|1|AA|A|1306
4V50|1|AA|U|1307
4V50|1|AA|U|1308
*
4V50|1|AA|A|1329
4V50|1|AA|U|1330
4V50|1|AA|G|1331
4V50|1|AA|A|1332
4V50|1|AA|A|1333
4V50|1|AA|G|1334

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13