IL_4V50_060

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V50|1|AA|C|1400, 4V50|1|AA|A|1503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_060 not in the Motif Atlas

Homologous match to IL_6CZR_165

Geometric discrepancy: 0.1462

The information below is about IL_6CZR_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V50|1|AA|C|1399
4V50|1|AA|C|1400
4V50|1|AA|G|1401
*
4V50|1|AA|C|1501
4V50|1|AA|A|1502
4V50|1|AA|A|1503
4V50|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

PHE TRNA (UNMODIFIED BASES)

Chain AX

MRNA