IL_4V50_084

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V50|1|BB|A|504, 4V50|1|BB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_084 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0959

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V50|1|BB|G|481
4V50|1|BB|A|482
4V50|1|BB|A|483
4V50|1|BB|C|484
*
4V50|1|BB|G|496
4V50|1|BB|A|497
4V50|1|BB|G|498
4V50|1|BB|U|499
4V50|1|BB|G|500
4V50|1|BB|A|501
4V50|1|BB|A|502
4V50|1|BB|A|503
4V50|1|BB|A|504
4V50|1|BB|A|505
4V50|1|BB|G|506
4V50|1|BB|A|507
4V50|1|BB|A|508
4V50|1|BB|C|509

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24