IL_4V50_180

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

4V50|1|CA|C|48, 4V50|1|CA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V50_180 not in the Motif Atlas

Homologous match to IL_5J7L_003

Geometric discrepancy: 0.0935

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V50|1|CA|C|47
4V50|1|CA|C|48
4V50|1|CA|U|49
4V50|1|CA|A|50
4V50|1|CA|A|51
4V50|1|CA|C|52
*
4V50|1|CA|G|359
4V50|1|CA|G|360
4V50|1|CA|G|361

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain CL

30S ribosomal protein S12