IL_4V51_012

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAGUU*AAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_012 not in the Motif Atlas

Homologous match to IL_6CZR_124

Geometric discrepancy: 0.2073

The information below is about IL_6CZR_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38684.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V51|1|AA|U|249
4V51|1|AA|A|250
4V51|1|AA|G|251
4V51|1|AA|U|252
4V51|1|AA|U|253
*
4V51|1|AA|A|273
4V51|1|AA|A|274
4V51|1|AA|G|275

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S17