IL_4V51_019

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_019 not in the Motif Atlas

Geometric match to IL_6CZR_131

Geometric discrepancy: 0.1738

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V51|1|AA|G|450
4V51|1|AA|A|451
4V51|1|AA|A|452
4V51|1|AA|A|453
4V51|1|AA|C|454
4V51|1|AA|C|455
4V51|1|AA|C|456
*
4V51|1|AA|G|475
4V51|1|AA|G|476
4V51|1|AA|A|477
4V51|1|AA|C|479
4V51|1|AA|U|480
4V51|1|AA|G|481
4V51|1|AA|A|482
4V51|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain DI

50S RIBOSOMAL PROTEIN L9