IL_4V51_054

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_054 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.1791

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V51|1|AA|G|1405
4V51|1|AA|U|1406
4V51|1|AA|C|1407
*
4V51|1|AA|G|1494
4V51|1|AA|U|1495
4V51|1|AA|C|1496

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AX

MRNA

Chain AY

Transfer RNA; tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA