IL_4V51_137

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V51|1|BA|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_137 not in the Motif Atlas

Homologous match to IL_7RQB_085

Geometric discrepancy: 0.4097

The information below is about IL_7RQB_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V51|1|BA|G|2110
4V51|1|BA|C|2111
4V51|1|BA|G|2112
4V51|1|BA|U|2113
4V51|1|BA|A|2114
4V51|1|BA|G|2115
4V51|1|BA|G|2116
4V51|1|BA|A|2117
4V51|1|BA|U|2118
4V51|1|BA|A|2119
4V51|1|BA|G|2120
*
4V51|1|BA|C|2178
4V51|1|BA|C|2179

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BC

50S RIBOSOMAL PROTEIN L1