IL_4V51_226

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

4V51|1|DA|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_226 not in the Motif Atlas

Homologous match to IL_7A0S_002

Geometric discrepancy: 0.0958

The information below is about IL_7A0S_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V51|1|DA|G|36
4V51|1|DA|C|37
*
4V51|1|DA|G|442
4V51|1|DA|A|443
4V51|1|DA|C|444

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DU

50S RIBOSOMAL PROTEIN L20