IL_4V51_301
3D structure
- PDB id
- 4V51 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- 4V51|1|DA|C|2111, 4V51|1|DA|G|2116, 4V51|1|DA|U|2118
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V51_301 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.2141
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V51|1|DA|G|2110
4V51|1|DA|C|2111
4V51|1|DA|G|2112
4V51|1|DA|U|2113
4V51|1|DA|A|2114
4V51|1|DA|G|2115
4V51|1|DA|G|2116
4V51|1|DA|A|2117
4V51|1|DA|U|2118
4V51|1|DA|A|2119
4V51|1|DA|G|2120
*
4V51|1|DA|C|2178
4V51|1|DA|C|2179
Current chains
- Chain DA
- 23S RIBOSOMAL RNA
Nearby chains
- Chain CW
- Transfer RNA; tRNA
- Chain DC
- 50S RIBOSOMAL PROTEIN L1
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