IL_4V51_338
3D structure
- PDB id
- 4V51 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGGGAG*CAGG
- Length
- 11 nucleotides
- Bulged bases
- 4V51|1|AA|G|1442|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V51_338 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.2869
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V51|1|AA|C|1439
4V51|1|AA|C|1440
4V51|1|AA|G|1441
4V51|1|AA|G|1442
4V51|1|AA|G|1442|||A
4V51|1|AA|A|1442|||B
4V51|1|AA|G|1443
*
4V51|1|AA|C|1459
4V51|1|AA|A|1460
4V51|1|AA|G|1461
4V51|1|AA|G|1462
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AT
- 30S RIBOSOMAL PROTEIN S20
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- 50S RIBOSOMAL PROTEIN L19
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