IL_4V51_356

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCCAC*GGAGC

Length

10 nucleotides

Bulged bases

4V51|1|CA|C|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V51_356 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.4458

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V51|1|CA|G|1258
4V51|1|CA|C|1259
4V51|1|CA|C|1260
4V51|1|CA|A|1261
4V51|1|CA|C|1262
*
4V51|1|CA|G|1273
4V51|1|CA|G|1274
4V51|1|CA|A|1275
4V51|1|CA|G|1276
4V51|1|CA|C|1277

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CN

30S RIBOSOMAL PROTEIN S14

Chain CU

30S RIBOSOMAL PROTEIN THX