IL_4V52_026

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

AAG*CU

Length

5 nucleotides

Bulged bases

4V52|1|AA|A|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_026 not in the Motif Atlas

Geometric match to IL_1JZV_002

Geometric discrepancy: 0.3906

The information below is about IL_1JZV_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

4V52|1|AA|A|460
4V52|1|AA|A|461
4V52|1|AA|G|462
*
4V52|1|AA|C|470
4V52|1|AA|U|471

Current chains

Chain AA

16S rRNA

Nearby chains