IL_4V52_198

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_198 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1703

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V52|1|CA|U|409
4V52|1|CA|G|410
4V52|1|CA|A|411
4V52|1|CA|A|412
4V52|1|CA|G|413
4V52|1|CA|A|414
4V52|1|CA|A|415
4V52|1|CA|G|416
*
4V52|1|CA|U|427
4V52|1|CA|G|428
4V52|1|CA|U|429
4V52|1|CA|A|430
4V52|1|CA|A|431
4V52|1|CA|A|432
4V52|1|CA|G|433

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BH

50S ribosomal protein L9

Chain CD

30S ribosomal protein S4