IL_4V52_262

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V52|1|DB|A|504, 4V52|1|DB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_262 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0882

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V52|1|DB|G|481
4V52|1|DB|A|482
4V52|1|DB|A|483
4V52|1|DB|C|484
*
4V52|1|DB|G|496
4V52|1|DB|A|497
4V52|1|DB|G|498
4V52|1|DB|U|499
4V52|1|DB|G|500
4V52|1|DB|A|501
4V52|1|DB|A|502
4V52|1|DB|A|503
4V52|1|DB|A|504
4V52|1|DB|A|505
4V52|1|DB|G|506
4V52|1|DB|A|507
4V52|1|DB|A|508
4V52|1|DB|C|509

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DU

50S ribosomal protein L24