IL_4V52_278

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_278 not in the Motif Atlas

Geometric match to IL_5J7L_271

Geometric discrepancy: 0.1485

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4V52|1|DB|G|862
4V52|1|DB|A|863
*
4V52|1|DB|U|913
4V52|1|DB|G|914
4V52|1|DB|C|915

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DA

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L16

Chain DW

50S ribosomal protein L27