IL_4V52_285

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4V52|1|DB|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_285 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1559

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

4V52|1|DB|U|1018
4V52|1|DB|U|1019
4V52|1|DB|A|1020
4V52|1|DB|A|1021
4V52|1|DB|G|1022
4V52|1|DB|U|1023
4V52|1|DB|G|1024
*
4V52|1|DB|C|1140
4V52|1|DB|U|1141
4V52|1|DB|A|1142
4V52|1|DB|A|1143
4V52|1|DB|A|1144

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6

Chain DJ

50S ribosomal protein L13