IL_4V52_293

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

4V52|1|DB|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V52_293 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.2636

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

4V52|1|DB|G|1202
4V52|1|DB|U|1203
4V52|1|DB|A|1204
4V52|1|DB|A|1205
4V52|1|DB|G|1206
*
4V52|1|DB|U|1240
4V52|1|DB|A|1241
4V52|1|DB|U|1242
4V52|1|DB|C|1243

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15