IL_4V53_003

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

4V53|1|AA|C|48, 4V53|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_003 not in the Motif Atlas

Homologous match to IL_5J7L_003

Geometric discrepancy: 0.0876

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V53|1|AA|C|47
4V53|1|AA|C|48
4V53|1|AA|U|49
4V53|1|AA|A|50
4V53|1|AA|A|51
4V53|1|AA|C|52
*
4V53|1|AA|G|359
4V53|1|AA|G|360
4V53|1|AA|G|361

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12