IL_4V53_022

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

4V53|1|AA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1093

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V53|1|AA|G|446
4V53|1|AA|G|447
4V53|1|AA|A|448
4V53|1|AA|G|449
4V53|1|AA|G|450
*
4V53|1|AA|C|483
4V53|1|AA|G|484
4V53|1|AA|U|485
4V53|1|AA|U|486
4V53|1|AA|A|487
4V53|1|AA|C|488

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16