IL_4V53_040

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_040 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0746

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V53|1|AA|C|779
4V53|1|AA|A|780
4V53|1|AA|A|781
4V53|1|AA|A|782
4V53|1|AA|C|783
*
4V53|1|AA|G|799
4V53|1|AA|G|800
4V53|1|AA|U|801
4V53|1|AA|A|802
4V53|1|AA|G|803

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain AU

30S ribosomal protein S21

Chain BB

Large subunit ribosomal RNA; LSU rRNA