3D structure

PDB id
4V53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
GUGGAUG*CUGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V53_074 not in the Motif Atlas
Homologous match to IL_5J7L_245
Geometric discrepancy: 0.0803
The information below is about IL_5J7L_245
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_04021.2
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4V53|1|BB|G|24
4V53|1|BB|U|25
4V53|1|BB|G|26
4V53|1|BB|G|27
4V53|1|BB|A|28
4V53|1|BB|U|29
4V53|1|BB|G|30
*
4V53|1|BB|C|510
4V53|1|BB|U|511
4V53|1|BB|G|512
4V53|1|BB|A|513
4V53|1|BB|A|514
4V53|1|BB|A|515
4V53|1|BB|C|516

Current chains

Chain BB
23S rRNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BQ
50S ribosomal protein L20
Chain BS
50S ribosomal protein L22

Coloring options:


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