IL_4V53_139

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

4V53|1|BB|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V53_139 not in the Motif Atlas

Homologous match to IL_5J7L_312

Geometric discrepancy: 0.0634

The information below is about IL_5J7L_312

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V53|1|BB|G|1770
4V53|1|BB|C|1771
*
4V53|1|BB|G|1980
4V53|1|BB|A|1981
4V53|1|BB|U|1982

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2